Mass spectrometry and climate science. Part II

Reposted from Dr. Judith Curry’s Climate Etc.

Posted on June 25, 2020

by Roland Hirsch

New technologies in mass spectrometry are advancing research in climate science

This is the second of a two-part posting based on a presentation prepared for the American Chemical Society’s National Meeting in March 2020. The meeting was cancelled, but the key points in that presentation (plus a couple of added examples based on new publications of relevant research) are in these two posts.

Reconstructing impacts of short term weather events

The first example in this part on the application of mass spectrometry to understanding recent climate and weather will look at a method used to obtain hourly to daily resolution short term weather events in the near past. There are a variety of ways of reconstructing past climate changes, but most of them do not have sufficient time resolution to identify short term weather events, such as extreme storms or heat or cold periods (“weather-timescale extreme events (WEEs …)”]). Yet the frequency and impact of such events could help developing better knowledge of past climate and its influencers.

A new study analyzed a marine bivalve in the South China Sea elemental ratios by NanoSIMS (Nano Secondary Ion Mass Spectrometry) to obtain daily to hourly resolution proxy records and confirm them using known daily weather for the location (Figure 7). The technique could be applied to fossil shells from the distant past to obtain similar weather information. The authors studied giant clam shells using the NanoSIMS technology to determine the iron/calcium (Fe/Ca) and strontium/calcium (Sr/Ca) ratios in different layers of the shells and were able to confirm the presence of nearby tropical cyclones (Figure 8) and also the impact of cold weather surges on the shells (Figure 9). [i]

Figure 7: D is the layers of the shell by autofluorescence; E and F are the NanoSIMS elemental ratios for indicated shell segments

Figure 8: Nearby tropical cyclones recorded in hourly Fe/Ca of Giant Clam shell obtained by NanoSIMS

Figure 9: Winter cold surges recorded in daily growth rate (green) and hourly Fe/Ca of Giant Clam shell (red)

Studying how aerosols impact the atmosphere

Understanding the makeup of different parts of the atmosphere and how they change is a major aspect of climate science, in addition to the study of air pollution and health impacts. Mass spectrometry plays a key role in this area (Figure 10).[ii]

Figure 10: Schematic of atmospheric chemistry analytical methods

Why are aerosols important for understanding climate?Couds reflect incoming solar radiation back into space and also absorb outgoing radiation, keeping that energy inside the Earth’s atmosphere. Aerosols are a key part of cloud formation, and the chemistry of aerosol particles influences the type of cloud they form. Thus aerosols have a major influence on the greenhouse effect, as well as on other aspects of weather and climate.

Many analytical techniques are used to analyze aerosol particles and to follow their behavior in the atmosphere. This essay is focused on mass spectrometry (MS), and several recently-published examples will showcase how the different types of MS can address specific aspects of aerosol chemistry:

  • Extractive Electrospray Ionization (EESI) to study metals in aerosols
  • EESI — Orbitrap MS to study organic compounds in aerosols
  • LC-EESI-TOF MS/MS to identify organic compound functional groups in aerosols (TOF means Time Of Flight)
  • TOF Chemical Ionization MS to follow reactions of sulfur-containing compounds in the atmosphere
  • Aerosol time-of-flight mass spectrometry (ATOFMS) and chemical ionization mass spectrometry (CIMS) to study formation of atmospheric chlorine-containing compounds due to rock salt aerosol particles

These are selected from many publications in this area to show the impact of mass spectrometry on the study of aerosols, but are not intended to cover all aspects of the field!

Also, while this essay is focused on mass spectrometric technologies and their applications in climate science, I hope that the limited details about these technologies do not get in the way of understanding their significance for climate research.

* * * * *

Metals are often found in aerosols, but are hard to measure accurately when the aerosols have to be transported to a laboratory. A new approach using Extractive Electrospray Ionization (EESI) with a portable Time-of-Flight MS system has enabled field measurements.[iv]

Figure 12: (a) Experimental mass spectrum of a mixture of zinc acetate, cadmium chloride hydrate, zinc acetate, cerium(III) acetate tetrahydrate, and barium acetate obtained with the EESI-TOF-MS. (b) Time series of an external mixture of lithium hydroxide monohydrate, lead acetate trihydrate, cadmium chloride hydrate, and cerium(III) acetate hydrate

* * * * *

Organic compounds in aerosols (organic aerosols or OAs) can have a substantial influence on how they develop and impact the atmosphere as they travel through it. It is difficult to characterize the many components of the OAs, especially since they are constantly changing as they travel in the atmosphere.

New mass spectrometric technology is making it possible to improve the accuracy and completeness of atmospheric OA measurements in real time. This enables measurement of secondary organic aerosols (SOAs) formed in atmospheric reactions as they happen. Extractive Electrospray Ionization combined with ultra high resolution Orbitrap enables measurements of OAs at relevant concentrations and a sufficient range of mass to cover the great variety of sizes of the OAs. [v] Figures 13 and 14 show examples of studies of a common OA, α-pinene.[vi]

Figure 13 (left): Mass spectra for unoxidized α-pinene (top), α-pinene oxidized at different concentrations (2nd and 3rd), and limonene oxidation products (bottom)

Figure 14 (right): SOAs produced from these two compounds (top and middle) and measurements of ambient air in summer

* * * * *

Functional groups are active sites in organic molecules, for example the aromatic ring that makes up benzene and is in the many compounds that include its ring, or the -OH functional group that is present in alcohols and sugars. Organic compounds with various functional groups are a significant component of aerosols, sourced, for instance, in atmospheric particulate matter. A new approach uses LC-ESI-TOF MS/MS to quantify organic aerosol functional groups in environmental samples. The scientists used this technique to study organic functional groups in air in Atlanta, Georgia, and the Long Island Sound, New York. An example of their results is shown in Figure 15.[vii]

Figure 15: Organic functional groups in aerosol compounds in two locations. The upper chart for each location expands the main chart to show the low concentration functional groups more clearly.

* * * * *

Dimethyl sulfide (DMS) is produced by phytoplankton in the oceans and is quite volatile. DMS is readily oxidized to form sulfur dioxide and sulfuric acid, among many products found in the atmosphere. There are several mechanisms for the oxidation and understanding them is important for modeling formation of aerosols and their climate impacts. A new study has used Time of Flight Chemical Ionization Mass Spectrometry to study sulfur compounds in air. The study was carried out in NASA aircraft missions that covered the air above the open Atlantic and Pacific oceans from 80º N to 85º S.

Hydroperoxylmethyl thioformate (HPMTF) was discovered to be a significant portion of the atmospheric sulfur and to play a major role in aerosol formation. The authors conclude: “Observationally constrained model results show that more than 30% of oceanic DMS emitted to the atmosphere forms HPMTF. Coincident particle measurements suggest a strong link between HPMTF concentration and new particle formation and growth. Analyses of these observations show that HPMTF chemistry must be included in atmospheric models to improve representation of key linkages between the biogeochemistry of the ocean, marine aerosol formation and growth, and their combined effects on climate.” [viii]

The paper includes a chart showing how the new information fits into the role of sulfur in aerosols, and the uncertainties in HPMTF chemistry in the air that need to be addressed in further research (Figure 16).

Figure 16: On the left: The basic mechanism of HPMTF formation. On the right: Concentrations observed using the NASA Atmospheric Tomography (ATom) mission, which used the Time of Flight Chemical Ionization Mass Spectrometry instrument

* * * * *

Atmospheric chlorine-containing aerosol particles are continually generated by sea spray. However, such particles are also observed far inland, especially in winter, due to use of rock salt and salt solutions to deice roads and sidewalks. More than 20 million tons of salt are used for this purpose in a typical winter in the United States alone. The chlorine in salt-containing aerosols leads to formation of nitryl chloride (ClNO2), which is a significant concern for health.

Just-published research used Aerosol Time-of-Flight Mass Spectrometry to measure the size and chemical composition of individual aerosol particles and used Chemical Ionization Mass Spectrometry to measure chemical compounds in the air in a winter period (February 17-18 and March 7-8) in an inland location adjacent to a roadway and sidewalk on which road salt and brine were applied during the study period.[ix] Their results are shown in Figure 17. The amount of ClNO2 is very low during the daytime as sunlight breaks the molecule into its reactive components, and increases overnight. The reactive components affect the levels of many atmospheric compounds and particulate matter, so having better experimental information is helpful in understanding this system.

Figure 17: On the left: Schematic diagram of the previous bulk method and the new single-particle method for measuring formation of nitryl chloride (ClNO2) from dinitrogen pentoxide (N2O5). On the right: Estimates using the bulk model (gray line) and using the single particle model (green line) and experimental measurements of ClNO2 using the new method (black line). Dashed blue lines represent modeled ClNO2 production from road salt only.

* * * * *

Biosketch Roland Hirsch has served the field of analytical chemistry in a 52-year career that spans teaching, research, and leadership at Seton Hall University, and 33 years of government service at the National Institutes of Health and the U.S. Department of Energy. Roland has been a leader of the ACS Division of Analytical Chemistry, as Councilor for 25 years, as Division Secretary for 4 years, Chair-Elect, Program Chair, and Chair, and as its Web Editor for 22 years. Roland organized the 50th-anniversary celebration of the Division and 25 years later, wrote the definitive history of the first 75 years of the Division, published in Analytical Chemistry in 2013. Roland has also been active in ACS Governance, including Chair of the Committee on International Activities, Secretary of the Committee on Nominations and Elections, Member of the Committee on Divisional Activities, Senior Chemists Task Force, Committee on Committees, and Liaison to the ACS Committee on Professional Training.

Based on a presentation prepared for the American Chemical Society National Meeting in Philadelphia in March 2020. It was to have been in the Division of Analytical Chemistry’s session “Advances in Mass Spectrometry”. The meeting was canceled, but this presentation was revised and made available on the web site for the meeting:

If you cannot access the presentation, please go to where you can obtain an ACS ID at no charge. It should allow you to sign in to view the presentation.


[i] H. Yan, et al., “Extreme weather events recorded by daily to hourly resolution biogeochemical proxies of marine giant clam shells”, PNAS (2020), and

[ii] P. Forbes, “Atmospheric Chemistry Analysis: A Review”, Anal. Chem. (2020), 92, 455-472.


[iv] S. Giannoukos, et al., “Real-Time Detection of Aerosol Metals Using Online Extractive Electrospray Ionization Mass Spectrometry”, Anal. Chem. (2020) 92, 1316−1325

[v] C.P. Lee, et al., “Online aerosol chemical characterization by extractive electrospray ionization – ultrahigh-resolution mass spectrometry (EESI-Orbitrap)” Envir. Sci. Technol., (2020), 54, 3871-3880


[vii] J.C. Ditto, T. Joo, J.H. Slade, P.B. Shepson, N.L. Ng, and D.R. Gentner, “Nontargeted Tandem Mass Spectrometry Analysis Reveals Diversity and Variability in Aerosol Functional Groups across Multiple Sites, Seasons, and Times of Day”, Environ. Sci. Technol. Lett. 2020, 7, 2, 60-69

[viii] P.R. Veres, et al., “Global airborne sampling reveals a previously unobserved dimethyl sulfide oxidation Mechanism in the marine atmosphere”, PNAS (2020), 117 (9) 4505-4510

[ix] S.M. McNamara, et al., “Observation of Road Salt Aerosol Driving Inland Wintertime Atmospheric Chlorine Chemistry”. ACS Central Science (2020), 6, 684-694.

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Kevin kilty
June 26, 2020 7:27 am

I admit to being a bit baffled by the graphic in the post title. The graphic shows something like visible, UV spectrometry. Mass spectrometry is fundamentally quite different.

Reply to  Kevin kilty
June 26, 2020 7:49 am

No need to be baffled. It’s just wrong.

June 26, 2020 7:28 am

This is definitely more sophisticated than measuring tree rings.

There are many criticisms of tree ring thermometers. I suspect that there are similar criticisms of using the chemical content of critter shells as a proxy for nearby cyclones, etc. So, I’m suspending my judgment until some actual biologists and biochemists weigh in.

Reply to  commieBob
June 26, 2020 8:53 am

I’m with you, Bob.

June 26, 2020 8:59 am

When living in Houston, I noticed a bush growing behind my property that had an unusual stinky odor. I analyzed the volatiles from the plant and found methyl and ethyl mercaptans in addition to methyl sulfide. In any case, I think the occurrence of sulfur volatiles emitted from terrestrial plants may be under appreciated.

Glen Livingston
Reply to  Scissor
June 26, 2020 10:02 am

Did it happen to smell like a skunk?

June 26, 2020 9:09 am

Did you consult with Search Greta Thunberg on writing this ?

Carbon Bigfoot
June 26, 2020 9:26 am

the uncertainties in HPMTF chemistry in the air that need to be addressed in further research (Figure 16).
Splains it all— Grant Money Troll

June 26, 2020 10:02 am

I can’t even tell whether this is wiggle-matching or ? I don’t see any correlation coefficients or sigmas. Replication? Sample sizes? Until I have more information, I’ll class this with bat poop layer speleothem proxies.

Robert of Texas
June 26, 2020 12:02 pm

I am still baffled by this article…it starts with measuring nearby oceanic events by comparing ratios of elements in clam shells, and then seems to magically jump to aerosols and climate research of the atmosphere.

First of all – are the clams being transported by surge events? How do you know they are local to that one spot? And secondly, how is this telling you anything about climate? Are you going to start inferring tropical storms by looking at ancient clan shells? OK…how does that tie into climate change driven by CO2? Are we just going to assume more or less storms means higher or lower temperatures? (historically lower temperatures mean more storms)

Or was this just some sort of “Gee, isn’t climate science cool” report and actually explains nothing at all?

old engineer
Reply to  Robert of Texas
June 26, 2020 1:08 pm

Robert of Texas

You are right. This paper isn’t trying to reach any conclusions. It is really saying “Gee, aren’t Mass Specs cool”. And indeed they are. The examples given show some of the gee-whiz information that mass specs can provide. If a person’s area of interest is not the same as the examples, they may tend to be under-whelmed. Organic aerosols were of interest to me when I was working, so I found that section very interesting.

Roland F Hirsch
Reply to  Robert of Texas
June 26, 2020 5:21 pm

Robert of Texas, Thank you for your comment. The point of this half of my presentation is a) to provide one addition example of how mass spectrometry technology can help find out about past climate (most was in the first post, which was already overly long), and separately, b) to show some ways in which the composition of aerosols can be determined in real time.

I am not presenting any particular theory about climate, but trying to explain how better understanding of aerosols is becoming possible, which may then lead to better models of climate (which is heavily influenced by aerosols).

June 26, 2020 2:44 pm

A point and an editor are desperately needed.

June 26, 2020 2:53 pm

It’s refreshing to see climate research paper without CO2 or Carbon in the title. Roland may soon learn that using these two words (whether or not the research has anything to do with them) can enhance ability to obtain future funding.

Roland Hirsch
Reply to  RelPerm
June 26, 2020 5:23 pm

RelPerm, I am too old to seek funding, but thanks for the advice!

Geoff Sherrington
June 27, 2020 2:34 am

Unless you have special exposure to Analytical Chemistry, you might not realise how large a part it has played in the advance of science. Thanks to Roland Hisch for some rather interesting examples of recent developments in mass spectrometry. There are many exciting future developments likely for those with logic, invention, imagination and persistence who choose this career path.
There is, however, a two-edged sword. The information from Analytical Chemistry can be used well, or used badly. It can progress the March of science, or harm it.
One measure of validity is accuracy of analysis. A lot of climate research is reported without proper procedures to determine and to report applicable accuracy data. That aspect requires more enlightenment and enforcement. Geoff S

Geoff Sherrington
June 27, 2020 4:14 am

“Hirsch”, no thanks to auto-correct.
Geoff S

Roland Hirsch
Reply to  Geoff Sherrington
June 27, 2020 7:47 am

Geoff: Thank you for your comment. As you point out, the analytical chemistry technique by itself does not ensure new knowledge will be gained. The choice of what to analyze and how must be dependent on valid scientific questions, and the results must be interpreted correctly.

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