Counting Your Penguin Chicks Before They Hatch

Guest Post by Willis Eschenbach

Well, the BBC, which as I understand it is an acronym for “Blindly Broadcasting Cra- ziness”, gives us its now-standard tabloid style headline, that

Climate change is ‘killing penguin chicks’ say researchers

Of course they’ve included the obligatory “awwwww-inspiring” picture, viz:

bbc penguins

Naturally, the researchers didn’t say what the Beeb claimed. What they said was in their paper, Climate Change Increases Reproductive Failure in Magellanic Penguins, viz:

Statistical Analyses

We tested whether chick age, amount of rain, or low temperature affected a chick’s probability of dying during a storm using our 28 years of data with multiple logistic regressions.

Mmmm … testing to see whether more young chicks die in extremely cold, rainy weather … seems to me that even city kids would know the answer to that one.

In any case, how does this blinding insight into penguin mortality tie into climate? Glad you asked. It has to do with their model … or rather their models.

climate change magellanic penguins predictor variablesFigure 1. A list of the combinations of three predictor variables used in their twenty-one different models. These are used to model the odds of a penguin chick dying in a storm. The three predictor variables are age (a), amount of storm rain (r), and low minimum temperatures (l). Sadly, they did not archive their data … so this is just pretty pictures at present. Click the image to embiggen.

Their logic and observations go like this. They’ve noticed that the period during which the penguins lay their eggs has gotten longer over the last 30 years. Their hypothesis is that this will make them more vulnerable to the storms. Only thing is, how to prove it?

Why, make up a bunch of computer models of chick mortality, of course. Why not? Or as they say:

We simulated the effects of breeding synchrony on chick mortality in storms. We simulated the proportion of chicks likely to die in a storm on a given day by the hatching spread: for 13 days (the mean for 1983–1986) and 27 days (the predicted value for the early 2080s, based on an increase of 0.15 days per year; see results).

I do love the “extend a trend to infinity” logic of saying that by 2080 (or to be exact, the “early 2080s”) the Magellanic penguins will have a 27 day spread in their egg-laying dates … and using that same logic, we can be sure that by the year 2500 they will be breeding randomly throughout the year … but I digress …

So they simulated the chick deaths from storms, and then to connect that to climate change, they say:

Climate models predict that the frequency and intensity of storms will continue to increase.

Hey, that settles it for me. Since the data says there’s been a change in the length of their laying season, and since models say that the storms will kill more chicks if their laying season gets longer, and since they’ve included one sentence to establish that climate models predict more storms in the future, heck, their work is done.

It’s a beautiful chain of imaginary causation, the scientific version of the bumper sticker that says, “God said it – I believe it – That settles it!”, with “Models” in place of the Deity.

I have to say, this all seems to me like a huge waste of good data. These fine folks have done a solid, workmanlike job of collecting a very large mass of data over 28 years … but then they simply waterboarded the data until it confessed. One example of this is their choice of models.

First, while it is legit to try 21 models, at the end of that process the model you find should be pretty amazing, or else you’re just flipping coins until you get seven heads in a row and declaring victory … especially when you just keep adding parameters.

Next, they make a laudable effort to only use real-world variables in their models. For example they say:

We included all 2-way interactions except age × age squared because we did not want to include a cubic fit for age which is unlikely to have biological meaning.

I like that point of view, that the predictor variables should be real-world variables with physical or biological meaning, and age, rain, and low temperatures certainly fit the bill. Now that seems legit until you get to some of the combinations they use. For example, the model that they finally chose has the predictor variables of the following form.

A + A2 + R + A*R + A2*R + A2*L + A2*R*L

where “A” is age, “R” is rain, and “L” is low temperatures.

And that all looks logical … until we factor and simplify it, and we get

R + A (R + 1)+ A2 (L + 1) (R + 1)

So in fact, rather than the 7 variables they say they are using, in fact they are only using 5 variables:

A, R, A2, (R + 1), and (L + 1)

Unfortunately two of these variables that they are using, “rain plus one” and “low temperatures plus one”, have no conceivable physical meaning.

And that, in turn, means that their best model is actually nothing more than curve fitting using unreal, imaginary parameters without biological or physical meaning.

It is for this reason, among others, that I’m very cautious when I make models, and in general I don’t like combination additive-multiplicative models of the type they use. Yes, I’m sure that people can make an argument for using them … I’m just saying that such models make me nervous, particularly when they end up with eight or ten parameters as in their models.

Here’s the strange part for me. Since they have good data on the length of the egg laying season, and good data on storms and chick deaths, why not just use the data to actually calculate the relationship between storm-related chick deaths and the length of the egg laying season? Perhaps I missed it, but I couldn’t find that calculation in all of their work. Instead, they make a complex model of the situation for which they already have data …

I see this as another tragic casualty of the ongoing climate hysteria. But I suppose I’m just being idealistic, and I’m overlooking the fact that in this current insane situation, it’s much easier to get funding if you say “Hey, I’m not just studying a bunch of birds that are too dumb to remember how to fly, I’m doing vital work on the climate crisis! Think of the grandchildren!”

Finally, despite their whizbang model, I strongly doubt the researchers’ conclusion that the change in the length of the breeding season will lead to more chick deaths. Natural species survive in part because  their methods of living and eating and giving birth are flexible, and they are able to change them in response to changing circumstances in such a way as to increase their odds of survival. The idea that the penguins are changing their breeding habits in the direction of communal suicide seems like … well, like an unusual claim that would require supporting evidence that is much more solid than a computer model with imaginary parameters to make me believe it.

Ah, well … onwards, ever onwards …

w.

N.B: If you disagree with me, please quote EXACTLY what it was that I said that you disagree with. A claim that I don’t know what I’m doing, or that I’m just wrong, or that I should go back to school, any of that kind of vague handwaving goes nowhere because I don’t have a clue what has you (perhaps correctly) upset … you could be right and no one will ever know it. So quote what you object to, that way we can all understand what you are referring to.

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old construction worker
January 30, 2014 4:05 am

Where are the bodies?

AP
January 30, 2014 4:07 am

enjoy…

garymount
January 30, 2014 4:10 am

M Courtney says:
January 30, 2014 at 3:58 am
johnmarshall (January 30, 2014 at 3:02 am)“EMBIGGEN” is a perfectly cromulent word.

You looked it up too   I first learned of Embiggen from our good friend Soylent-Green, but alas his web site shall we say is no longer cromulent. It also wasn’t SFW.

Alan Robertson
January 30, 2014 4:10 am

Thanks Willis. I look forward to your posts. Maybe someday you’ll write about the Great Snowy Owl populations moving South and being found now in such places as Ohio, Florida and along the Red River border of Oklahoma and Texas. We’d also be glad to welcome Magellanic (or any) penguin residents if they could adapt to our extremes.

AP
January 30, 2014 4:12 am

Frank you are indeed correct, these is always a constant in front of the variables which is determined by the regression. And you are also correct that it doesn’t change the fact that this study is a classic example of GIGO

Alan Robertson
January 30, 2014 4:17 am

garymount says:
January 30, 2014 at 4:10 am
M Courtney says:
January 30, 2014 at 3:58 am
johnmarshall (January 30, 2014 at 3:02 am)“EMBIGGEN” is a perfectly cromulent word.
You looked it up too I first learned of Embiggen from our good friend Soylent-Green, but alas his web site shall we say is no longer cromulent. It also wasn’t SFW.
_________________________
On the bright side, Soylent- Green won’t have to worry about new “rules” for journalists, which the Obama administration is cooking up as we speak. Of course, in the US we already have a Constitution dealing with journalists, but what difference at this point does it make?
http://www.politico.com/blogs/media/2014/01/holder-new-media-guidelines-in-weeks-182277.html

mike
January 30, 2014 4:23 am

Ah yes! The “Spirit of Mawson”, boondoggle deal and now the other shoe drops! The agit-prop pivot from “endangered Polar Bears”, which the hive-propagandists got some real mileage out of before the spoil-sport, ursine brutes went all counter-narrative on their eco-hypster betters with some “inconvenient truth” in the high fertility-rate department, to the next scare-booger BIG-THING!: “endangered penguins”–no! that’s not it!–make that the “endangered, aren’t-they-so-cute-and-darling!, oh!-the-poor-babies!, PENGUIN CHICKS”, no less!
And just think: If the Akademik Shokalskiy hadn’t gotten stuck in ice and become a highly-publicized, laughing-stock symbol of various “things”, then we just might have had Professor Turney, at this very moment, before us, pleading the poor penguin-chick’s case as the publicity-hound, media-genic, Indiana-Jones/Crocodile-Dundee./spiritual-heir-of-Mawson/Carl-Sagan-doppelganger, hybrid “new face” of CAGW “bogey-man”, rip-off-carbon-tax-and-wind-turbine-subsidy-philic “science”.
There are some reports, I understand, that the AS got stuck in Antarctic ice because a group of the passengers “dawdled”, against the skipper’s orders, during a trip ashore–an excursion in which it appears the relevant passengers (to include the BBC guys?) took almost as many pictures of penguins as they did “selfies”! Lots of “denier”, conspiracy-theory “ideations” (as one would expect from those anti-science, flat-earther, Republican-brain types) on the “why and wherefore” of the “dawdle”. So let me pile on. Maybe, just maybe, the “dawdle” ashore was prompted by the need to get even more video of “concerned greenshirts” and “ENDANGERED, PENGUIN CHICKS!!!!”, due to an insufficient footage, at the point in time when the ship’s master called the shore-“party” off, for some planned, alarmist documentary (BBC?), that has now likely gone bust.
Notice how the hive’s big-push! enviro-campaigns always involve some “celebrity” critter in the roll-out? Same trite, going-through-the-motions, recipe card, used over and over again. Others might disagree, but I kinda think the hive’s sad decline traces its origin to Jan Berzin’s first, last, and only trip to the Lubyanka’s basement (the wiki entry doesn’t even begin to plumb Berzin’s “depths”, by the way–indeed, the entry might have even been “sanitized” by some good comrade).
P. S. Over at tamino’s there’s a post entitled “Judith Curry reponds…sort of”. And amidst all the Curry-phobic booger-flicks, flying about the comment section of the post, a certain “nealjking” considers various latin terms, among which he speaks approvingly of the rhyme potential of the phrase “scire nolo” (I’m not kidding!!!). Well I compassionately sent a comment off to neal that I thought might help him out a bit in an area in which it’s pretty apparent that he needs a “little” help. But the moderator obviously didn’t like my act and my comment to neal seems to have been sent down tamino’s memory hole. But I don’t want neal to be deprived of my thoughtful good advice and so hope he has a chance to read it here:
“Scire nolo”?
In a ditty?
You must think that’s
Oh! so witty
Some food for thought:
Don’t be a dork
And in such verse
Best stick a fork
And I say this as a pal, neal!

LdB
January 30, 2014 4:23 am

old construction worker says:
January 30, 2014 at 4:05 am
Where are the bodies?

Bound neatly in the mathematics, with a headstone of statistics and all surrounded by the neat model cemetery … it’s all there you just have to dig.

pat
January 30, 2014 4:30 am

remember this study came out during the Turney Fiasco:
9 Jan: NatureWorldNews: Emperor Penguins Adapting to Climate Change, Study Suggests
Scientists from the Australian Antarctic Division and the Scripps Institution of Oceanography at UC San Diego in California also worked on the current research.
http://www.natureworldnews.com/articles/5580/20140109/emperor-penguins-adapting-climate-change-study-suggests.htm
8 Jan: PLOS One: Emperor Penguins Breeding on Iceshelves
That emperor penguins can move their breeding site depending upon ice conditions to a more stable location, including onto the top of the ice-shelf itself, means new factors should be incorporated into modelled population trajectories for this species. Whether such factors will provide temporary or permanent relief from the impacts of climate change remains uncertain.
The fact that emperors exhibit a previously unknown breeding behaviour, intimates that other less-well known species may also have similar unknown adaptive behaviours that may also offer temporary or permanent relief to the challenges of climate change…
http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0085285

Jerry Magnan
January 30, 2014 4:31 am

gnomish, no need to apologize. Pointing out that there is a some integral and essential “churn” in penguin populations to sustain their numbers is very important to understanding what’s up with penguins! And those penguin populations are HUGE and are imprecisely censused due to those large populations:
No. of Magellanic (a.k.a. “Jackass”) penguins – 2,500,000 (est.)
No. of Adlie penguins – 4,800,000 to 6,400,000 (est.)
Yeah, you read that right – MILLIONS of’em!
Trying to keep good track of highly variable chick mortalities and then projecting the effects of small climate variations on penguin populations is tantamount to a blind man trying to herd cats.
BTW – there are 60 million penguins in the world split among 17 subspecies. An endangered species they ain’t.

Gareth Phillips
January 30, 2014 4:33 am

Good thing we do not have any Penguins ( Great Welsh word by the way!) in the UK, they would never breed with the way our climate is deteriorating. http://www.bbc.co.uk/news/uk-25944823

January 30, 2014 4:41 am

Gareth Phillips says at January 30, 2014 at 4:33 am…
How can the BBC have sunk so low?
Parts of England have had their wettest January since records began more than 100 years ago. But which parts?
If there are 2 equal parts then that’s an average of a 50 year event.
3 parts, an average of a 33 year event.
Divode the country into 4 parts then the rainfall would be expected every 25 years.
And the Somerset levels are not a ¼ of England.

ozspeaksup
January 30, 2014 4:50 am

todays NYTimes
NOTE warming???
not cold?
For Already Vulnerable Penguins, Study Finds Climate Change Is Another Danger
By HENRY FOUNTAIN
Intense rainfall and extreme heat combined with predation and starvation make life difficult for penguins, a University of Washington scientist says.

January 30, 2014 4:58 am

This is so embarrassing. In one paper they combine practically every aspect of the way that the climate political agenda has twisted the practice of science. As you point out, Willis, they actually did collect an enormous amount of data that has the potential to add to our knowledge of penguins. But, rather than publish something real, they get sucked into the vortex of the climate religion. Just as the Soviet Union forced upon scientists the mandate that every finding must in some way confirm or endorse the rightness of Marxism-Leninism, in order to get published, these craven researchers took a perfectly good research effort and twisted it to serve a political agenda. It is a betrayal of all the gradual students who spent cold days counting eggs and penguins in the frozen Antarctic. They probably don’t even know enough to be upset about it. They are just glad their names on a publication. Even climate alarmists should be embarrassed by this, because it so transparently violates the proper use of models. That model! OMFG! Let’s throw a zillion parameters on the wall and see what sticks. Who would want to be associated with that?
The stupid, it burns. Ain’t nobody got time for that!

richardscourtney
January 30, 2014 5:01 am

M Courtney:
re your post at January 30, 2014 at 4:41 am.
Ummmm. No.
The tops of mountains do not flood. Low areas may flood. etc.
Your illustration assumes all areas are the same. They are not.
Your basic point is right but your illustration is wrong. A bad illustration loses an argument.
Richard

Bob Shapiro
January 30, 2014 5:02 am

If chick age is a valid variable (as I suspect it is), then, if younger is more vulnerable, it would tend to mitigate to possible catastrophic effects of rain & temperature.
Suppose two cases (and age 1 day is ultra vulnerable):
1. The breeding all took place on a single day
2, It is spread out through the year (1/365 of the total each day of the year)
For case 1, a bad day of rain and temperature when all the chicks are 1 day old could kill 100% of this years’ chicks. However, in case 2, only 1/365 would die for each such bad day.
It’s very possible that increasing the hatching spread might increase the chances of at least 1 death in bad weather, while minimizing the effect on the flock total over time.

Mike Ozanne
January 30, 2014 5:07 am

So I’m waiting for a client to fix his remote access, a bit bored, so I peeked at the paper, out of boredom. I couldn’t see any colony census data that would indicate the change in total adult breeding pairs over time. An essential measure of colony health. Did I miss it?

Gail Combs
January 30, 2014 5:07 am

Penguin Evolution:

The Evolution of Modern Penguins and the Importance of Fossils in Molecular Clocks
…the oldest known penguins date back to just over 60 million years ago, the timing of the evolution of modern penguins (i.e. the group containing all living species and their most recent common ancestor) has been the subject of considerable debate. A paper published in 2006 by Baker et al. estimated that the crown group (modern penguins) diverged from other penguins around 41 million years ago. The problem with this however is that the oldest fossil penguin that is definitely modern is only around 11 million years old, leaving a 30 million year gap.
…So where does the new paper by Subramanian and colleagues fit into this picture? Well the results they obtained from their analysis suggest that modern penguins first evolved around 20 million years ago, a figure that is much more in line with what the fossils are telling us….

HMMMmmm 20 million years. And the Eemian interglacial, 1400,000 years ago was a lot warmer than the Holocene in the Antarctic: link
Looking at four interglacials (450,000 yrs) the Holocene still looks mild/cool in temperature. link
Five million years shows the earth is progressively getting colder. link
65 million years shows the earth is really heading into the deep freeze :>)
In the last graph you can see around 35 million years ago the Antarctic glaciation occurred and at 25 million there was a bit of a thaw but since then it has been all been down hill in the temperature department.
I doubt modern penguins have much to worry about.
………………
That took about ten minutes to put together. Why can’t scientists and journalists do a bit of INVESTIGATION like they are supposed to.

Zac
January 30, 2014 5:08 am

Off Topic, sorry.
But I think many will enjoy this sketch of the UK Parliament committee for Energy and Climate Change when they met the “Sceptic” scientists.
.
http://order-order.com/2014/01/30/sketch-unsettling-the-settled-science-of-climate-change/#comment-2033680

Rob Ricket
January 30, 2014 5:08 am

Most non-equatorial animal breeding cycles are determined by photoperiod…deer hunting 101.

JohnM
January 30, 2014 5:12 am

Well..The Beeb have been getting very ¨sceptical¨ recently, even to the extent that a recent item about high rainfall had an explanation in which didn´t have global warming or climate change anywhere in it!
http://www.bbc.co.uk/news/uk-25962332

Gareth Phillips
January 30, 2014 5:18 am

M Courtney says:
January 30, 2014 at 4:41 am
Gareth Phillips says at January 30, 2014 at 4:33 am…
How can the BBC have sunk so low?
Parts of England have had their wettest January since records began more than 100 years ago. But which parts?
If there are 2 equal parts then that’s an average of a 50 year event.
3 parts, an average of a 33 year event.
Divode the country into 4 parts then the rainfall would be expected every 25 years.
And the Somerset levels are not a ¼ of England.
@Garethman. No they are not, and some parts of Scotland have had below average rainfall. But the parts of England which have had rainfall levels which are the highest on record, and those that have not had such records have suffered month in and month out of rain rain rain, with occasional damaging storm to vary things. It’s easy to say ‘nothing unusual, move along there’ but at some point all these things add up to together to give a good indication that the climate of the UK is changing, and that change is not a good one. Whether you believe in the ideas of human effected climate change ( as I do) or not, we have to start adapting the way we cope with this weather. The Penguin chicks show what happens when organisms do not adapt, and it’s a lesson for all of us. The only record that seems to be safe at the moment is to get through a season without breaking one.

Tom H
January 30, 2014 5:19 am

Gary and Alan….resurrected at Solyent Siberia! ( http://soylentrefuge.blogspot.com )

F.A.H.
January 30, 2014 5:21 am

The paper appears to be a classical example of “overfitting.” The Wiki description is “In statistics and machine learning, overfitting occurs when a statistical model describes random error or noise instead of the underlying relationship. Overfitting generally occurs when a model is excessively complex, such as having too many parameters relative to the number of observations. A model which has been overfit will generally have poor predictive performance, as it can exaggerate minor fluctuations in the data.” (http://en.wikipedia.org/wiki/Overfitting) A nice discussion can be found at http://www.psychosomaticmedicine.org/content/66/3/411.full.pdf+html . Far too heavy a hand on the canned regression packages and too light on the involvement of an actual trained statistician.

January 30, 2014 5:28 am

richardscourtney says January 30, 2014 at 5:01 am

The tops of mountains do not flood. Low areas may flood. etc.
Your illustration assumes all areas are the same. They are not.

No, some areas are more prone to rainfall but the records compare the same area over time.
The record in question relates to rainfall – not flooding.
The illustration is pertinent.